Index

Symbols

--add-bonds command line option --add-rtfs command line option, [1] --box command line option, [1] --chains command line option --charge command line option --del-atom command line option --droplet command line option --in command line option, [1], [2], [3], [4], [5], [6] --ionic-strength command line option --ions command line option --ligands command line option --merge command line option --move command line option

--mutate command line option --no-add-ions command line option --no-patching-terminus command line option --out command line option, [1], [2], [3], [4], [5], [6], [7] --pbc command line option --super-cells command line option --top command line option, [1], [2] --waters command line option -i command line option, [1], [2], [3], [4], [5], [6] -m command line option -o command line option, [1], [2], [3], [4], [5], [6], [7] -t command line option, [1], [2]

C

command line option --add-bonds --add-rtfs, [1] --box, [1] --chains --charge --del-atom --droplet --in, [1], [2], [3], [4], [5], [6] --ionic-strength --ions --ligands --merge --move --mutate --no-add-ions --no-patching-terminus --out, [1], [2], [3], [4], [5], [6], [7] --pbc --super-cells --top, [1], [2] --waters -i, [1], [2], [3], [4], [5], [6] -m -o, [1], [2], [3], [4], [5], [6], [7] -t, [1], [2] Modifications

M

Modifications command line option