pdbtop

Tutorials

  • Tutorial 0: Install pdbtop
  • Tutorial 1: A Standard Protein
  • Tutorial 2: Ligand Preparation
  • Tutorial 3: A Protein and its Covalently Bonded Ligand
  • Tutorial 4: Modifications and Mutations
  • Tutorial 5: Get A Better PDB File
  • Tutorial 6: Define My Own Modification
  • Tutorial 7: Supercell of a Molecule

Manual

  • 1. check
  • 2. remove
  • 3. topol
  • 4. modify
  • 5. ligand
  • 6. pdb
  • 7. psf
  • 8. solvate
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